Imaging & Flow Cytometry Core
Address: L6-11, 6/F, Laboratory Block, 21 Sassoon Road, Pokfulam Hong Kong

Tel: 39177557

Equipment — Analysis Softwares


Version: 7.5.2

Available module:

Imaris - 3D and 4D real-time interactive data visualization

Imaris MeasurementPro - Critical statistical parameters extraction and imaging quantification

Imaris Track - Live cell tracking & analysis

FilamentTracer - Automatic detection of neurons (dendritic trees, axons and spines), microtubules, and other filament-like structures in 2D, 3D and 4D

More information at:

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MetaMorph Offline

Version: 7.7.11

Available module:

MetaMorph Premier - review multi-dimensional data, region measurements, cell tracking and colocalization measurement

Angiogenesis tube formation - analysis of blood vessel formation for angiogenesis in cancer, diabetes and other vascular disease research

Cell cycle - classification and quantification of cells in G0/G1, S, G2, Early or Late M stages of the cell cycle

Cell Health - classification of cells in viable, early apoptosis, late apoptosis or necrosis

Cell Scoring /Multi Wavelength Cell Scoring - Identification and quantification of subpopulations of cells tagged with fluorescent probes

Count Nuclei - automatic counting of nuclei for most types of cells

Granularity - analysis of punctate structures in cells

Live/dead - analysis of cell proliferation or death

Mitotic Index - quantitative discrimination of mitotic and interphase cells

Neurite Outgrowth - measurement and characterization of neurite length and branching

More information at:

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Zen 2012 Offline

LSM510 offline software is for LSM image process and analysis after acquisition, including maximum intensity projection, 3D rendering, colocalization measurement and time-lapse data analysis (physiology module).

Available modules:

  • Physiology
  • Tiles

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Zen 2.3 Blue Edition

Carl Zeiss offline software for .czi files generated by LSM microscopes.


  • Airyscan processing
  • Batch image processing
  • 3D rendering
  • colocalization
  • image quantification
  • image analysis
  • Macro editor
  • Zen connect

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Version: 7.6.1

FlowJo software is used for the analysis of flow cytometry data.


  • Generate publication-quality graphics and tables
  • Batch analysis
  • Compensation
  • Cell cycle analysis
  • Cell proliferation

More information at:

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Volocity logo

Version: 6.3.0
Volocity software is for analysing *.mvd2 data files from PerkinElmer UltraVIEW VoX spinning disk confocal microscope.


  • multi-dimensional image data visualisation (XY, orthogonal projection, 3D)
  • 3D rendering of confocal imaging data
  • basic measurements

More information at: PerkinElmer Volocity 6.3 release note

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